AxoBench evaluation CLI

Command contract

The tables include parser defaults, choices, required arguments, flag actions, and compatibility options hidden from ordinary help. Every command and subcommand accepts -h or --help. Flag defaults refer to their destination value: store_true sets it true, while store_false sets it false. For example, --blocking-transfer changes non_blocking from its default true to false. Named presets may override parser defaults; explicitly supplied options take precedence. Use the installed command’s --help when working with another revision.

--baseline-cache and --baseline-checkpoint are mutually exclusive. --output and the compatibility alias --output-json are mutually exclusive. --save-cache cannot be combined with either baseline comparison path. The current AxoBench package is required for execution.

axosim-evaluate-model

Argument	Type/action	Default	Required	Choices
checkpoint	str / store	None	yes	—
--baseline-checkpoint	str / store	None	no	—
--baseline-cache	str / store	None	no	—
--save-cache	str / store	None	no	—
--dataset-root	str / store	None	yes	—
--model-id	str / store	None	no	—
--device	str / store	'auto'	no	—
--batch-size	int / store	128	no	—
--max-samples	int / store	None	no	—
--max-intervention-samples	int / store	None	no	—
--max-interventions	int / store	8	no	—
--intervention-workers	int / store	4	no	—
--interventions	str / store	None	no	—
--multiple-morphologies	flag / store_true	False	no	—
--morphology-id	str / store	None	no	—
--ignore-start	int / store	500	no	—
--calibration-fraction	float / store	0.25	no	—
--default-spike-threshold	float / store	0.0	no	—
--bootstrap-replicates	int / store	250	no	—
--bootstrap-seed	int / store	20260711	no	—
--output	str / store	None	no	—
--output-json	str / store	None	no	—

--interventions: comma-separated intervention names; default discovers all

--multiple-morphologies: balance the 120/40 evaluation profile across available morphologies

--morphology-id: specific morphology for the default single-morphology evaluation

--output: optional .json or .csv report path

--output-json: Compatibility option hidden from default help.

Parser source